rs27518907 SNP Detail

Summary

• ID
  rs27518907
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129470559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGAGTT CCGTAGGCAG
  CATCCACAAC AGGCAGCTTA CAACAGCTTG TGCCTCCAGC TCAGCTAATC CTTTTCTGGC
  CTCTCTGGTC ACACACACAA TCAAAAAACA CAATGAATCT TCATCTTCAT TTAAATTTTT
  CTCACTTTTG AATTTGATAA AGTTAGAGAA ATAGATCGGG AGCTGTTGGG GACACCTGGT
  R
  CCATCTTGTC TCCTGTTGTG GAATCCCTAA AGTCCCAGTG ACACAGGATG AATATACAAC
  AACATTTATT TAGGCTCTGT GACAGTCTAC AGAAACCTTG ATGGGATTCA ATGCATTTTT
  TATTAAGACA TTTGGGGCCC GAGTTTCCTC TCCTCCTCCC CTCCATCCTG TGCTCTCTAA
  ATTCAGCTTT TGGAAACCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37719060	NES09233109	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27518907					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719060	NES09233109	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129470559 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	49 bp downstream
Gm68905	predicted gene, 68905	1373 bp upstream
Rr367705	regulatory region 367705	1281 bp downstream
Rr600278	regulatory region 600278	1384 bp distal
Rr600279	regulatory region 600279	920 bp distal
Rr600280	regulatory region 600280	807 bp distal
Rr600281	regulatory region 600281	295 bp proximal
Rr600282	regulatory region 600282	532 bp proximal
Rr600283	regulatory region 600283	1773 bp proximal
Tssr39178	transcription start site region 39178	1115 bp downstream
Tssr43528	transcription start site region 43528	1565 bp upstream
Tssr43529	transcription start site region 43529	1469 bp upstream
Tssr43530	transcription start site region 43530	1414 bp upstream
Tssr43531	transcription start site region 43531	1365 bp upstream
Tssr43532	transcription start site region 43532	1746 bp downstream
Tssr43533	transcription start site region 43533	1755 bp downstream
Tssr43534	transcription start site region 43534	1769 bp downstream