rs27518908 SNP Detail

Summary

• ID
  rs27518908
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129470510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATT TAAATTTTTC TCACTTTTGA
  W
  TTTGATAAAG TTAGAGAAAT AGATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37719061	NES09233108	PERLEGEN	MM_PANEL2	f	SNP	A			T	A	T		T	T	A		A	T	A		A
ss45603192	mCV24828933	ABI	CRAMUS_MOUSE	f	SNP		A	T				A		T
ss147442875	ENSMUSSNP2668348	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
ss321313994	CHEV_4_129253961	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27518908					SNP	A	A	T	T	A	T	A	T	T	A	T	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719061	NES09233108	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129470510 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	98 bp downstream
Gm68905	predicted gene, 68905	1324 bp upstream
Rr367705	regulatory region 367705	1232 bp downstream
Rr600278	regulatory region 600278	1335 bp distal
Rr600279	regulatory region 600279	871 bp distal
Rr600280	regulatory region 600280	758 bp distal
Rr600281	regulatory region 600281	344 bp proximal
Rr600282	regulatory region 600282	581 bp proximal
Rr600283	regulatory region 600283	1822 bp proximal
Tssr39178	transcription start site region 39178	1066 bp downstream
Tssr43528	transcription start site region 43528	1516 bp upstream
Tssr43529	transcription start site region 43529	1420 bp upstream
Tssr43530	transcription start site region 43530	1365 bp upstream
Tssr43531	transcription start site region 43531	1316 bp upstream
Tssr43532	transcription start site region 43532	1795 bp downstream
Tssr43533	transcription start site region 43533	1804 bp downstream
Tssr43534	transcription start site region 43534	1818 bp downstream