rs27518909 SNP Detail

Summary

• ID
  rs27518909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA TCTAGCTGCC CGTGGAGCAA
  R
  AATTAGCAAC TAGCTGGGTT TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37719062	NES09233125	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	G	A	A	G		G	A	G		G
ss147442860	ENSMUSSNP3749699	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss321313989	CHEV_4_129253046	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27518909					SNP	G	A	A	A	G	A	G	A	A	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719062	NES09233125	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469595 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1013 bp downstream
Gm68905	predicted gene, 68905	409 bp upstream
Rr367705	regulatory region 367705	317 bp downstream
Rr600277	regulatory region 600277	1852 bp distal
Rr600278	regulatory region 600278	420 bp distal
Rr600279	regulatory region 600279	within coordinates
Rr600280	regulatory region 600280	136 bp proximal
Rr600281	regulatory region 600281	1259 bp proximal
Rr600282	regulatory region 600282	1496 bp proximal
Tssr39178	transcription start site region 39178	151 bp downstream
Tssr43528	transcription start site region 43528	601 bp upstream
Tssr43529	transcription start site region 43529	505 bp upstream
Tssr43530	transcription start site region 43530	450 bp upstream
Tssr43531	transcription start site region 43531	401 bp upstream