rs27518910 SNP Detail

Summary

• ID
  rs27518910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AACAACCCAA
  CCCTGAGAAT GACAGAGCCG GCAGATGTGT CTCCAGACCT GATATACCGC CCTGCTGTCC
  TCACTTAGAA ACCTTAGCAT TTTACAGCTC ACCTCAGCTT CAGCACCCGC CTGGGGGGCA
  CGGTGCTGAC AAGCAGTGCA TGAATTCTAA AGTGTGTGTT CTAAAGTAAT GCATATCTAG
  Y
  TGCCCGTGGA GCAAGAATTA GCAACTAGCT GGGTTTTTTT CTTTTTTCTT TTTTTTTTTT
  CATTTATTTA TTTATTTATT TATTTATTTA TTTATTTATT TATTTATTTA TTTATTTATT
  ATATGTAAGT ACACTGTAGC TGTCCTCAGA CACTCCAGAA GAGGGAGTCA GATCTCGTTA
  CGAGATGGTT GTGAGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37719063	NES09233124	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27518910					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719063	NES09233124	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469580 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1028 bp downstream
Gm68905	predicted gene, 68905	394 bp upstream
Rr367705	regulatory region 367705	302 bp downstream
Rr600277	regulatory region 600277	1837 bp distal
Rr600278	regulatory region 600278	405 bp distal
Rr600279	regulatory region 600279	within coordinates
Rr600280	regulatory region 600280	151 bp proximal
Rr600281	regulatory region 600281	1274 bp proximal
Rr600282	regulatory region 600282	1511 bp proximal
Tssr39178	transcription start site region 39178	136 bp downstream
Tssr43528	transcription start site region 43528	586 bp upstream
Tssr43529	transcription start site region 43529	490 bp upstream
Tssr43530	transcription start site region 43530	435 bp upstream
Tssr43531	transcription start site region 43531	386 bp upstream