rs27518911 SNP Detail

Summary

• ID
  rs27518911
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCG CCTGGGGGGC ACGGTGCTGA
  S
  AAGCAGTGCA TGAATTCTAA AGTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	WSB/EiJ
ss37719064	NES09233123	PERLEGEN	MM_PANEL2	f	SNP	G		G	G		C	C		G
ss147442855	ENSMUSSNP2604405	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	WSB/EiJ
rs27518911					SNP	G	G	G	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719064	NES09233123	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469529 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1079 bp downstream
Gm68905	predicted gene, 68905	343 bp upstream
Rr367705	regulatory region 367705	251 bp downstream
Rr600277	regulatory region 600277	1786 bp distal
Rr600278	regulatory region 600278	354 bp distal
Rr600279	regulatory region 600279	within coordinates
Rr600280	regulatory region 600280	202 bp proximal
Rr600281	regulatory region 600281	1325 bp proximal
Rr600282	regulatory region 600282	1562 bp proximal
Tssr39177	transcription start site region 39177	1968 bp downstream
Tssr39178	transcription start site region 39178	85 bp downstream
Tssr43528	transcription start site region 43528	535 bp upstream
Tssr43529	transcription start site region 43529	439 bp upstream
Tssr43530	transcription start site region 43530	384 bp upstream
Tssr43531	transcription start site region 43531	335 bp upstream