rs27518912 SNP Detail

Summary

• ID
  rs27518912
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT TAGAAACCTT AGCATTTTAC
  W
  GCTCACCTCA GCTTCAGCAC CCGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37719065	NES09233122	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27518912					SNP	T	T	T	T	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719065	NES09233122	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469485 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1123 bp downstream
Gm68905	predicted gene, 68905	299 bp upstream
Rr367705	regulatory region 367705	207 bp downstream
Rr600277	regulatory region 600277	1742 bp distal
Rr600278	regulatory region 600278	310 bp distal
Rr600279	regulatory region 600279	within coordinates
Rr600280	regulatory region 600280	246 bp proximal
Rr600281	regulatory region 600281	1369 bp proximal
Rr600282	regulatory region 600282	1606 bp proximal
Tssr39177	transcription start site region 39177	1924 bp downstream
Tssr39178	transcription start site region 39178	41 bp downstream
Tssr43528	transcription start site region 43528	491 bp upstream
Tssr43529	transcription start site region 43529	395 bp upstream
Tssr43530	transcription start site region 43530	340 bp upstream
Tssr43531	transcription start site region 43531	291 bp upstream