rs27518913 SNP Detail

Summary

• ID
  rs27518913
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCAGAG GGAAGGGGGA
  ACAGGAAATG GCGGGGGGGG GGGGGGGGAG GAAGTCTGAG TTGGAAAGTC AGACAAAGAG
  AGAAACACAG AAACAAAGGC TGAGAGTCAC ACAGAAGGAA AAAAAAAAAA ACAACCCAAC
  CCTGAGAATG ACAGAGCCGG CAGATGTGTC TCCAGACCTG ATATACCGCC CTGCTGTCCT
  S
  ACTTAGAAAC CTTAGCATTT TACAGCTCAC CTCAGCTTCA GCACCCGCCT GGGGGGCACG
  GTGCTGACAA GCAGTGCATG AATTCTAAAG TGTGTGTTCT AAAGTAATGC ATATCTAGCT
  GCCCGTGGAG CAAGAATTAG CAACTAGCTG GGTTTTTTTC TTTTTTCTTT TTTTTTTTTC
  ATTTATTTAT TTATTTATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37719066	NES09233121	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27518913					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719066	NES09233121	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469461 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1147 bp downstream
Gm68905	predicted gene, 68905	275 bp upstream
Rr367705	regulatory region 367705	183 bp downstream
Rr600277	regulatory region 600277	1718 bp distal
Rr600278	regulatory region 600278	286 bp distal
Rr600279	regulatory region 600279	within coordinates
Rr600280	regulatory region 600280	270 bp proximal
Rr600281	regulatory region 600281	1393 bp proximal
Rr600282	regulatory region 600282	1630 bp proximal
Tssr39177	transcription start site region 39177	1900 bp downstream
Tssr39178	transcription start site region 39178	17 bp downstream
Tssr43528	transcription start site region 43528	467 bp upstream
Tssr43529	transcription start site region 43529	371 bp upstream
Tssr43530	transcription start site region 43530	316 bp upstream
Tssr43531	transcription start site region 43531	267 bp upstream