rs27518914 SNP Detail

Summary

• ID
  rs27518914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGAAGCT GTGTGCACCT
  CAGCTGCAGA GGGAAGGGGG AACAGGAAAT GGCGGGGGGG GGGGGGGGGA GGAAGTCTGA
  GTTGGAAAGT CAGACAAAGA GAGAAACACA GAAACAAAGG CTGAGAGTCA CACAGAAGGA
  AAAAAAAAAA AACAACCCAA CCCTGAGAAT GACAGAGCCG GCAGATGTGT CTCCAGACCT
  R
  ATATACCGCC CTGCTGTCCT CACTTAGAAA CCTTAGCATT TTACAGCTCA CCTCAGCTTC
  AGCACCCGCC TGGGGGGCAC GGTGCTGACA AGCAGTGCAT GAATTCTAAA GTGTGTGTTC
  TAAAGTAATG CATATCTAGC TGCCCGTGGA GCAAGAATTA GCAACTAGCT GGGTTTTTTT
  CTTTTTTCTT TTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37719067	NES09233120	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27518914					SNP	A	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719067	NES09233120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469440 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1168 bp downstream
Gm68905	predicted gene, 68905	254 bp upstream
Rr367705	regulatory region 367705	162 bp downstream
Rr600277	regulatory region 600277	1697 bp distal
Rr600278	regulatory region 600278	265 bp distal
Rr600279	regulatory region 600279	within coordinates
Rr600280	regulatory region 600280	291 bp proximal
Rr600281	regulatory region 600281	1414 bp proximal
Rr600282	regulatory region 600282	1651 bp proximal
Tssr39177	transcription start site region 39177	1879 bp downstream
Tssr39178	transcription start site region 39178	within coordinates
Tssr43527	transcription start site region 43527	1995 bp upstream
Tssr43528	transcription start site region 43528	446 bp upstream
Tssr43529	transcription start site region 43529	350 bp upstream
Tssr43530	transcription start site region 43530	295 bp upstream
Tssr43531	transcription start site region 43531	246 bp upstream