rs27518915 SNP Detail

Summary

• ID
  rs27518915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAAACAACCC AACCCTGAGA
  R
  TGACAGAGCC GGCAGATGTG TCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37719068	NES09233119	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	A		A		G	G		A
ss147442848	ENSMUSSNP531931	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G					A
ss321313988	CHEV_4_129252859	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27518915					SNP	A	G	G	G	A	G	G	G	G	A	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719068	NES09233119	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469408 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1200 bp downstream
Gm68905	predicted gene, 68905	222 bp upstream
Lck	lymphocyte protein tyrosine kinase	1993 bp upstream
Rr367705	regulatory region 367705	130 bp downstream
Rr600276	regulatory region 600276	1985 bp distal
Rr600277	regulatory region 600277	1665 bp distal
Rr600278	regulatory region 600278	233 bp distal
Rr600279	regulatory region 600279	within coordinates
Rr600280	regulatory region 600280	323 bp proximal
Rr600281	regulatory region 600281	1446 bp proximal
Rr600282	regulatory region 600282	1683 bp proximal
Tssr39177	transcription start site region 39177	1847 bp downstream
Tssr39178	transcription start site region 39178	20 bp upstream
Tssr43526	transcription start site region 43526	1986 bp upstream
Tssr43527	transcription start site region 43527	1963 bp upstream
Tssr43528	transcription start site region 43528	414 bp upstream
Tssr43529	transcription start site region 43529	318 bp upstream
Tssr43530	transcription start site region 43530	263 bp upstream
Tssr43531	transcription start site region 43531	214 bp upstream