rs27518916 SNP Detail

Summary

• ID
  rs27518916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGGCGG GCAGAGACAT
  TCTGACATCA GCAGGAGTTT AAGAACTCCA CAACAAGCTG CCAGCAGGCA AAAATGAGGA
  TTGTGTCCCT CACAGGCAGA GGGCCAGGCC ACCAGTGATG TGAGGAACCC CAAATGGCCC
  CTATCAGGGC CAAGAATGGG TCCTGACCTC ACTGGAAAGA AAGTGTAAAT GTGTCACCTC
  Y
  TGAGCTACGC TGAGTGAGCA GGCAGGGGGA GGGGAGCCCA CAGAGCATTG TTGGGGTTTG
  TGAGGTAGGA GCTGAAGCTG TGTGCACCTC AGCTGCAGAG GGAAGGGGGA ACAGGAAATG
  GCGGGGGGGG GGGGGGGGAG GAAGTCTGAG TTGGAAAGTC AGACAAAGAG AGAAACACAG
  AAACAAAGGC TGAGAGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37719069	NES09233118	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27518916					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719069	NES09233118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469170 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1438 bp downstream
Gm68905	predicted gene, 68905	within coordinates
Lck	lymphocyte protein tyrosine kinase	1755 bp upstream
Rr367705	regulatory region 367705	within coordinates
Rr600276	regulatory region 600276	1747 bp distal
Rr600277	regulatory region 600277	1427 bp distal
Rr600278	regulatory region 600278	within coordinates
Rr600279	regulatory region 600279	6 bp proximal
Rr600280	regulatory region 600280	561 bp proximal
Rr600281	regulatory region 600281	1684 bp proximal
Rr600282	regulatory region 600282	1921 bp proximal
Tssr39177	transcription start site region 39177	1609 bp downstream
Tssr39178	transcription start site region 39178	258 bp upstream
Tssr43525	transcription start site region 43525	1779 bp upstream
Tssr43526	transcription start site region 43526	1748 bp upstream
Tssr43527	transcription start site region 43527	1725 bp upstream
Tssr43528	transcription start site region 43528	176 bp upstream
Tssr43529	transcription start site region 43529	80 bp upstream
Tssr43530	transcription start site region 43530	25 bp upstream
Tssr43531	transcription start site region 43531	11 bp downstream