rs27518917 SNP Detail

Summary

• ID
  rs27518917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129468978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAT ACTGCACAGG TATCTGTGGC
  R
  GGCAGAGACA TTCTGACATC AGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37719070	NES09233117	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	A	A	A	G		G	A	A		G
ss147442833	ENSMUSSNP6915615	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss321313985	CHEV_4_129252429	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27518917					SNP	G	G	A	A	A	G	A	A	A	A	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719070	NES09233117	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129468978 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1630 bp downstream
Gm68905	predicted gene, 68905	14 bp downstream
Lck	lymphocyte protein tyrosine kinase	1563 bp upstream
Rr367705	regulatory region 367705	within coordinates
Rr600276	regulatory region 600276	1555 bp distal
Rr600277	regulatory region 600277	1235 bp distal
Rr600278	regulatory region 600278	within coordinates
Rr600279	regulatory region 600279	198 bp proximal
Rr600280	regulatory region 600280	753 bp proximal
Rr600281	regulatory region 600281	1876 bp proximal
Tssr39177	transcription start site region 39177	1417 bp downstream
Tssr39178	transcription start site region 39178	450 bp upstream
Tssr43525	transcription start site region 43525	1587 bp upstream
Tssr43526	transcription start site region 43526	1556 bp upstream
Tssr43527	transcription start site region 43527	1533 bp upstream
Tssr43528	transcription start site region 43528	11 bp downstream
Tssr43529	transcription start site region 43529	101 bp downstream
Tssr43530	transcription start site region 43530	160 bp downstream
Tssr43531	transcription start site region 43531	203 bp downstream