rs27520793 SNP Detail

Summary

• ID
  rs27520793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128513885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGCAGG TGGATTTCTG
  AGCTCGAGGC CAGCCTGGTC TACAAAGTGA GTTCCAGGAC AGCCAGGGCT ACACAAAGAA
  ATCCTGTCTC GAAAAAACAA AACAAAAAAA AGTTCCTAAA ATTTTAATAT GCAAAAAGAC
  TAAGCATGAG GGGTTAGGAG GCAGGCTTGC AAGGCATTGA CGGGTAGTCC AGGAGCCCAG
  R
  CAGGATTAGC AGCTGTAAGA GAGGACAGGC CCATGAGTGA CAGAGCCCTG GAGGAGCATT
  GAAGAGCTGC AACATAGAAC CGGTGTCTAA ATATCTGCAC CTCTCCAACT TCATGGCGCT
  GATCTTGCCT CAAGAGGCCC CCAAATCAGA GTGGGGAACC CCGTGTGTAA ATCAATTCTG
  GCAGGGCAAA ATGGGGGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722512	NES09175542	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G		G	A	A	G		A
ss321305865	CHEV_4_128297336	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27520793					SNP	A	A	A	A	A	A	A	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722512	NES09175542	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128513885 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	1158 bp distal
Rr599983	regulatory region 599983	779 bp distal
Tlr12	toll-like receptor 12	1473 bp upstream
Tssr43437	transcription start site region 43437	1765 bp upstream
Tssr43438	transcription start site region 43438	1495 bp upstream
Tssr43439	transcription start site region 43439	1467 bp upstream
Tssr43440	transcription start site region 43440	1446 bp upstream