rs27520794 SNP Detail

Summary

• ID
  rs27520794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128513866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCCAGCA CTCGGGAGGC
  AGAAGCAGGT GGATTTCTGA GCTCGAGGCC AGCCTGGTCT ACAAAGTGAG TTCCAGGACA
  GCCAGGGCTA CACAAAGAAA TCCTGTCTCG AAAAAACAAA ACAAAAAAAA GTTCCTAAAA
  TTTTAATATG CAAAAAGACT AAGCATGAGG GGTTAGGAGG CAGGCTTGCA AGGCATTGAC
  R
  GGTAGTCCAG GAGCCCAGAC AGGATTAGCA GCTGTAAGAG AGGACAGGCC CATGAGTGAC
  AGAGCCCTGG AGGAGCATTG AAGAGCTGCA ACATAGAACC GGTGTCTAAA TATCTGCACC
  TCTCCAACTT CATGGCGCTG ATCTTGCCTC AAGAGGCCCC CAAATCAGAG TGGGGAACCC
  CGTGTGTAAA TCAATTCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37722513	NES09175538	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27520794					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722513	NES09175538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128513866 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	1139 bp distal
Rr599983	regulatory region 599983	760 bp distal
Tlr12	toll-like receptor 12	1454 bp upstream
Tssr43437	transcription start site region 43437	1746 bp upstream
Tssr43438	transcription start site region 43438	1476 bp upstream
Tssr43439	transcription start site region 43439	1448 bp upstream
Tssr43440	transcription start site region 43440	1427 bp upstream