rs27520800 SNP Detail

Summary

• ID
  rs27520800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128512801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGGGCT GGGATGATGG
  CTGCGCACCA CTAGAACAGT CTGCAGTGTG GTTAGACCCC TGGCTTCTGT GCCTGCTACA
  TCCTCACCCC CAACCCCCCT CCACACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC AAGTAGAGTC TGGTCTGGCT TTGCACAGTC CTCAAGTAAA
  R
  CACCTCTTCT CTTCTGAGCC TGTGTTCTCT TCTGTCCAAG TAGACTAACT CCCGTTTGCT
  TGATTGCTCT GTAGGATTGC TGCAAACACA GATTTAGATC AGCTGGGGTT TTCTCCTTGT
  TAGTTTCATT ATGACTTCCT TTCTTTACTG ACCCCCCTGG AGTTCTTGGG TTAAACACAA
  ATGGGGATGT TTTATAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722519	NES09175598	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G		G	A	A	G		A
ss321305847	CHEV_4_128296252	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27520800					SNP	A	A	A	A	G	A	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722519	NES09175598	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128512801 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	74 bp distal
Rr599983	regulatory region 599983	within coordinates
Tlr12	toll-like receptor 12	389 bp upstream
Tssr43437	transcription start site region 43437	681 bp upstream
Tssr43438	transcription start site region 43438	411 bp upstream
Tssr43439	transcription start site region 43439	383 bp upstream
Tssr43440	transcription start site region 43440	362 bp upstream