rs27520803 SNP Detail

Summary

• ID
  rs27520803
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:128512317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCAGAAT GTGAAATAGC
  GGGAGACCAG GGGCAGTCGG GAGCCTTCGG TCACCAGGCA GTTGGAAGTG CTCCACCCAG
  TTACCAGAGG CAGGGAAAGG AGGAGACCTG GCAGCAGCCA GTACCTGCCC ATCTCTACAC
  CAGAGGAATC AGAGCTGAGA GGACTTTAGA CTCCTATGCC TCCGGGTTAC CAATACTCTC
  W
  TCCACCTCAG AGTACCTGCA AGGTCCGGGA GCACCGTCAA AGGGCCACTG TGGAAGCCGG
  GAAGTGAGGA GGCCGACTTG GAGATACTTA GCACTGAGGC TTCGAGGGAG GGGAAATGAC
  ACCAGGGCAA CGTAGGGGGA TGGGGGGGTC TCACTTCCTG TTAGGAGAAA GCAAACAGAG
  TTTCTTTTCT TGTTGTTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722522	NES09175683	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T		T	A	A	T		A
ss321305838	CHEV_4_128295768	CHEVERUD	SCREENING_POP	f	SNP									A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27520803					SNP	A	A	A	A	A	A	A	T	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722522	NES09175683	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128512317 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr599982	regulatory region 599982			85 bp proximal
Rr599983	regulatory region 599983			467 bp proximal
Tlr12	toll-like receptor 12			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr43437	transcription start site region 43437			197 bp upstream
Tssr43438	transcription start site region 43438			48 bp downstream
Tssr43439	transcription start site region 43439			85 bp downstream
Tssr43440	transcription start site region 43440			104 bp downstream