rs27520805 SNP Detail

Summary

• ID
  rs27520805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128512283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCATGC AGCAAGAAAG
  GATAGCTTGG AATGGCGGCA GAATGTGAAA TAGCGGGAGA CCAGGGGCAG TCGGGAGCCT
  TCGGTCACCA GGCAGTTGGA AGTGCTCCAC CCAGTTACCA GAGGCAGGGA AAGGAGGAGA
  CCTGGCAGCA GCCAGTACCT GCCCATCTCT ACACCAGAGG AATCAGAGCT GAGAGGACTT
  Y
  AGACTCCTAT GCCTCCGGGT TACCAATACT CTCATCCACC TCAGAGTACC TGCAAGGTCC
  GGGAGCACCG TCAAAGGGCC ACTGTGGAAG CCGGGAAGTG AGGAGGCCGA CTTGGAGATA
  CTTAGCACTG AGGCTTCGAG GGAGGGGAAA TGACACCAGG GCAACGTAGG GGGATGGGGG
  GGTCTCACTT CCTGTTAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722524	NES09175681	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C		C	T	T	C		T
ss321305836	CHEV_4_128295734	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27520805					SNP	T	T	T	T	T	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722524	NES09175681	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128512283 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	119 bp proximal
Rr599983	regulatory region 599983	501 bp proximal
Tlr12	toll-like receptor 12	within coordinates
Tssr43437	transcription start site region 43437	163 bp upstream
Tssr43438	transcription start site region 43438	82 bp downstream
Tssr43439	transcription start site region 43439	119 bp downstream
Tssr43440	transcription start site region 43440	138 bp downstream