rs27520811 SNP Detail

Summary

• ID
  rs27520811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128511538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGCTCAAA GTGGGCAACA GCCTCAGCAG CCAGCTCGGC
  CGTGGCAGTC TGTGCATACA AGACATCGAG TTTCTGAAGT CCCAGGCCCT TCAGCCACAC
  R
  GCATCCAGTG GTGTTCTTGT CAGGTCCAGA ATCTCCACCT GGAGACCCTG GAGGGACCCA
  GGACTAGCCA TCTTCAGCTT CCAGTTGGAT GACAGATCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37722530	NES09175675	PERLEGEN	MM_PANEL2	f	SNP	G		G	A		A	A	G	G	G	G	G	A
ss45651190	mCV24831008	ABI	CRAMUS_MOUSE	f	SNP		A			G		A
ss147431524	ENSMUSSNP6355933	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27520811					SNP	G	A	G	A	G	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722530	NES09175675	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128511538 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	864 bp proximal
Rr599983	regulatory region 599983	1246 bp proximal
Tlr12	toll-like receptor 12	within coordinates
Tssr43437	transcription start site region 43437	571 bp downstream
Tssr43438	transcription start site region 43438	827 bp downstream
Tssr43439	transcription start site region 43439	864 bp downstream
Tssr43440	transcription start site region 43440	883 bp downstream