rs27520812 SNP Detail

Summary

• ID
  rs27520812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128511536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCCAGT GCTTGAAAGA
  CCCAAGGTCT TCAGGCTGTG GCAGGAAGCC AGAGCCTCCT GAGATATAGA TCCTATCTTG
  CTTTCTTTCA CAATCAAGCC CTGCAGCTCA AAGTGGGCAA CAGCCTCAGC AGCCAGCTCG
  GCCGTGGCAG TCTGTGCATA CAAGACATCG AGTTTCTGAA GTCCCAGGCC CTTCAGCCAC
  R
  CGGCATCCAG TGGTGTTCTT GTCAGGTCCA GAATCTCCAC CTGGAGACCC TGGAGGGACC
  CAGGACTAGC CATCTTCAGC TTCCAGTTGG ATGACAGATC CAACTTCTGC AGGGTCCACG
  AAACCCTGGA GGAGGAACCT TGCACCAGAT CTGGGAACAT ACCAGCCAGC TCTCCCACGT
  CCTGAATGCA ACTGAGCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722531	NES09175674	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G		G	A	A	G		A
ss321305823	CHEV_4_128294987	CHEVERUD	SCREENING_POP	f	SNP							A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27520812					SNP	A	A	A	A	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722531	NES09175674	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128511536 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	866 bp proximal
Rr599983	regulatory region 599983	1248 bp proximal
Tlr12	toll-like receptor 12	within coordinates
Tssr43437	transcription start site region 43437	573 bp downstream
Tssr43438	transcription start site region 43438	829 bp downstream
Tssr43439	transcription start site region 43439	866 bp downstream
Tssr43440	transcription start site region 43440	885 bp downstream