rs27520816 SNP Detail

Summary

• ID
  rs27520816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128511128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGATTCTT TGCTCCCCAG
  AAGCCAGGCT CTGGGCTCAT CCGTATTTGG GTATCTAGCA AGCTAAGGGT GGTCAATGCA
  GGCAGAGCCG CCAACCAGTT CTTACCCAGG TGAAGCAGGG GGTTTCCATC CAGCTTCAAG
  GTCTCTAGTT GCTGGAGCTC CTGGAATAGG TATCCCTCCA GGGAAAGCAG CTGGTTGTAC
  Y
  GAAGCAGCAG CTCTCGCAAG TGGGGTAAGC AGGAGAAGGC GGCTGGAGGC AGGATGCGCA
  ACCTGTTGCC TGACAGATCC AGAGTCGTGA GTCCTGACAC ATCTCCCGTC TCATTCATGC
  ACAGCACGGC GCTCTGCAGT TGGTTTCCGG ACAGCTCCAG TCGCTGAAGC CTAGGCATGG
  CAGTCAGGAA GCCTGGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37722535	NES09175670	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27520816					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722535	NES09175670	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128511128 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	1274 bp proximal
Rr599983	regulatory region 599983	1656 bp proximal
Tlr12	toll-like receptor 12	within coordinates
Tssr43437	transcription start site region 43437	981 bp downstream
Tssr43438	transcription start site region 43438	1237 bp downstream
Tssr43439	transcription start site region 43439	1274 bp downstream
Tssr43440	transcription start site region 43440	1293 bp downstream