rs27520817 SNP Detail

Summary

• ID
  rs27520817
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128510804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTGGAGA GCAGGGAAGA CCCCAGAAGC ATTCTGGGAC
  CCCAGCTTCA GCTTCAGTCC CCCGCCGCTT ATAGTCAAGG TCTCCAAGGA AGGAAAGATC
  K
  CTGGGGACAG CGTCCAGTGC TCCGTCGTGC CTGAGGCTAT ATGAAGCTCT AAGCTGGTCA
  GATACATGGG CAGGAACAAT ACTGCCGGAG CAGGGAGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37722536	NES09175669	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	G	T		G	T	G	G	G	G	G	G
ss45705664	mCV24831010	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		T
ss147431514	ENSMUSSNP667160	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27520817					SNP	G	G	T	G	T	G	T	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722536	NES09175669	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128510804 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	1598 bp proximal
Rr599983	regulatory region 599983	1980 bp proximal
Tlr12	toll-like receptor 12	within coordinates
Tssr43437	transcription start site region 43437	1305 bp downstream
Tssr43438	transcription start site region 43438	1561 bp downstream
Tssr43439	transcription start site region 43439	1598 bp downstream
Tssr43440	transcription start site region 43440	1617 bp downstream