rs27520819 SNP Detail

Summary

• ID
  rs27520819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:128510647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCCGTAG GCTGGGCAGC CCAGTGATAA GGCAGGGTCT
  GGAGCTGTTT CCAGCACCCC ATACCCTCAA GGACTGAAGT TTGGGGAGCT GCCAGAGGAA
  R
  AGGTTGGAGG TACCCTGGGA GCAGAAGGCA TCCAAGCTGT TCTTAAGCAG GGAGAGCTTC
  TGGAGAGCAG GGAAGACCCC AGAAGCATTC TGGGACCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722538	NES09175667	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	G	G	A	G		G	A	A	G		G
ss147431504	ENSMUSSNP892376	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss321305819	CHEV_4_128294098	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27520819					SNP	A	A	G	A	G	A	G	G	G	A	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722538	NES09175667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128510647 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	1755 bp proximal
Tlr12	toll-like receptor 12	Coding-Synonymous
Tssr43437	transcription start site region 43437	1462 bp downstream
Tssr43438	transcription start site region 43438	1718 bp downstream
Tssr43439	transcription start site region 43439	1755 bp downstream
Tssr43440	transcription start site region 43440	1774 bp downstream