rs27520822 SNP Detail

Summary

• ID
  rs27520822
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128510271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGCAAG GCAATTAGCA
  TGAACACCAA GGCAGAACTA GCCAAAAAGA GTTTCAGCTC CAACGTCTGG GGGCAGTGGT
  CCCAGAGAAA GGAGGGAAGG GAACCCCTAG CAGAGAGCCT GTCTTGTCCT GGACATAAGC
  GATTGTCTCT TATGTATATG TACGTTTTAG TGGACCGCTT AACCCATGGC TCCATCCACG
  M
  ATTGGCACAG TGGCAGGCCA GGTTTGACTC CAGAATGTAT ATATAGTGGG GCATCTGAGG
  GCTGTACTCC CTCAGACTGT CCTGCAGCAT CAAGTCCTTC TCGTATTCTA GCACTAAGAC
  CTGGAGACTG TGCAGGCGCT GGAAAGCAGC AGCCGACAGT GACTTGAGGC CTGTGCTGGA
  TAGCACTAAG GCCTGGAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37722541	NES09175664	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27520822					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722541	NES09175664	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128510271 () rs orientation: forward

Symbol	Name	Function Class
Tlr12	toll-like receptor 12	within coordinates
Tssr43437	transcription start site region 43437	1838 bp downstream