rs27525809 SNP Detail

Summary

• ID
  rs27525809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:108091063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATCTTA AAATTATCTC
  TATTTATAAA TATGCTTTAT AAAGATTAAT ATTTTTCTAG TTACTTCTTA AATATAATTA
  AAGACCTTTC CAATTCTTTT CCACTGTCTG AGCTAATTAG AGCTAAATTA GTGATATTTG
  CTAAATTACT AACATTTAAT TTAATGGGAA AATATTCTCT TGTGGAATAC AAGGAGTTTG
  Y
  AATTCTAAGC AATTAGCTAC CTTTTTCTCA AATAATATTA AAACTATAGT TTCATGTTAC
  AAGCCTCCCA TATAAAGTTA TAGAATACAC AGTTGAATCC CCTTAAACTT CTAATATGTT
  GAAACCTGAT AGAATATGAA GTGCTACTAT AGGCTCACAA TTTGTCAAAG TTCTGCATCT
  TTCAGAGGTG ATACCTAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37680350	NES09050319	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27525809					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37680350	NES09050319	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:108091063 () rs orientation: forward

Symbol	Name	Function Class
D2Mit58	DNA segment, Chr 2, Massachusetts Institute of Technology 58	959 bp distal
Gm13912	predicted gene 13912	within coordinates