rs27528549 SNP Detail

Summary

• ID
  rs27528549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126156059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTTCGA AATAGGGACT
  TTCCAAGACC AGTCTGGGAG AGAGAAGAAT TTGCAGAACA TCACAGTGCC AGTCGTGGGG
  GAGGAAAATA AGGACACTCT GTGGACAATG TAGGACTACC ACAAGGTGCG GATGCCACCT
  AGCGGCCATA ATGGTGCAGC CACCCGGGCG CTGGTAGCAT TCCGGAGCTG CAGCTCGAGC
  Y
  GAATCACGGG TGGGACTTCC GGGTAGAACT GCCGGATGCT GTAGTCTGAC TTTGGTCAGC
  CGAACCACAA GTCCCGGGGT CCTCTGCGCC ACACCGCGCA GGCGCAGTGA GGAGGGGCCG
  GTCAGTCCTA GACGCTGAGG GGCCGCGGCT GGGTTGAATC GGCGACTCCC GGGGTCTGGG
  ATCTGGGTTG TGAGGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37732468	NES09191986	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		C	T	T	T	C	T	T	C	C
ss45601642	mCV22781781	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss147407602	ENSMUSSNP6849472	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27528549					SNP	T	T	C	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732468	NES09191986	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126156059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	within coordinates
Rr398488	regulatory region 398488	within coordinates
Rr599660	regulatory region 599660	1432 bp distal
Rr599661	regulatory region 599661	within coordinates
Rr599662	regulatory region 599662	51 bp distal
Rr599663	regulatory region 599663	70 bp proximal
Trappc3	trafficking protein particle complex 3	139 bp upstream
Tssr38986	transcription start site region 38986	1876 bp downstream
Tssr38987	transcription start site region 38987	103 bp upstream
Tssr38988	transcription start site region 38988	116 bp upstream