rs27528550 SNP Detail

Summary

• ID
  rs27528550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126155960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAAACTT TTTATAATGA
  ACTTTAGACC TCTGTGTGAG CCATCGCTAG TTTTTCAGGA CATCCTGGGC GCTTCTGGAG
  CTGATCTGCA GCAACAGAAA ACAGTTCGAA ATAGGGACTT TCCAAGACCA GTCTGGGAGA
  GAGAAGAATT TGCAGAACAT CACAGTGCCA GTCGTGGGGG AGGAAAATAA GGACACTCTG
  Y
  GGACAATGTA GGACTACCAC AAGGTGCGGA TGCCACCTAG CGGCCATAAT GGTGCAGCCA
  CCCGGGCGCT GGTAGCATTC CGGAGCTGCA GCTCGAGCTG AATCACGGGT GGGACTTCCG
  GGTAGAACTG CCGGATGCTG TAGTCTGACT TTGGTCAGCC GAACCACAAG TCCCGGGGTC
  CTCTGCGCCA CACCGCGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37732469	NES09191985	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27528550					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732469	NES09191985	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126155960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	within coordinates
Rr398488	regulatory region 398488	45 bp upstream
Rr599660	regulatory region 599660	1333 bp distal
Rr599661	regulatory region 599661	within coordinates
Rr599662	regulatory region 599662	27 bp proximal
Rr599663	regulatory region 599663	169 bp proximal
Trappc3	trafficking protein particle complex 3	238 bp upstream
Tssr38986	transcription start site region 38986	1777 bp downstream
Tssr38987	transcription start site region 38987	202 bp upstream
Tssr38988	transcription start site region 38988	215 bp upstream