rs27528552 SNP Detail

Summary

• ID
  rs27528552
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126155663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACGATCT GTGCTCATGT
  CTCATTAATA TTTACAGCAA CTGAAAGAAC TTCAGCATCT GGCCTCAGAT GGCAAGCCTG
  GGATTAGAAC TCGGCACTGA GTGCCACCAC AGCCGGCATC TTGGTTTTTC TGGGAACTAG
  GCAGGGTAGC TGTTCTAGAG AAGGGACGGT AAGTGATTTG GATTTGTTAA AAAGGCCACA
  W
  GTGTAAGGAT GCAGGGCTTG GCTGTGTTTG GGGTTTGGGA ACAGATGGCA GTTGAAAGAG
  AAAGCCGTTA ACTATCCTGA CATAGAATAT GTGGTCATGC AAACTTTTTA TAATGAACTT
  TAGACCTCTG TGTGAGCCAT CGCTAGTTTT TCAGGACATC CTGGGCGCTT CTGGAGCTGA
  TCTGCAGCAA CAGAAAACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37732471	NES09191983	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	A	A		T	A	A	A	A	A	T
ss45622459	mCV22781793	ABI	CRAMUS_MOUSE	f	SNP	A	A	T					A		A
ss147407589	ENSMUSSNP6831296	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27528552					SNP	A	A	T	A	A	A	A	A	T	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732471	NES09191983	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126155663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	220 bp proximal
Rr398487	regulatory region 398487	1978 bp downstream
Rr398488	regulatory region 398488	342 bp upstream
Rr599660	regulatory region 599660	1036 bp distal
Rr599661	regulatory region 599661	within coordinates
Rr599662	regulatory region 599662	324 bp proximal
Rr599663	regulatory region 599663	466 bp proximal
Trappc3	trafficking protein particle complex 3	535 bp upstream
Tssr38986	transcription start site region 38986	1480 bp downstream
Tssr38987	transcription start site region 38987	499 bp upstream
Tssr38988	transcription start site region 38988	512 bp upstream