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rs27528558 SNP Detail
Summary
  • ID
    rs27528558
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr4:126155431 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGACCTGAAT TCCAAGCACA
    GTGCCCACAG GGCTGACCAC TAAGGAGAGA CGGCCGGAGC CAAATCCAAA GGGCTGTGGT
    CAGTGATGAC AGGGCTTTGC CTCTGTGAAG GGTAAGAAGG GTTTGGTCAG CTAGCACATT
    CCTCAACGAT TGTTGGGCTG TGTTTGGATC TGTTGGACTG TCTTGATAGT GTAGCTCGAA
    K
    GGAATCACAT TTCCTCTGTG CCTTTTCTGT GCCCACGATC TGTGCTCATG TCTCATTAAT
    ATTTACAGCA ACTGAAAGAA CTTCAGCATC TGGCCTCAGA TGGCAAGCCT GGGATTAGAA
    CTCGGCACTG AGTGCCACCA CAGCCGGCAT CTTGGTTTTT CTGGGAACTA GGCAGGGTAG
    CTGTTCTAGA GAAGGGACGG                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37732477 NES09191977 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G G G G T G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27528558 SNP G G G G G G G G G G G G G T G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37732477 NES09191977 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:126155431 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14813 CpG island 14813 452 bp proximal
Rr398487 regulatory region 398487 1746 bp downstream
Rr398488 regulatory region 398488 574 bp upstream
Rr599660 regulatory region 599660 804 bp distal
Rr599661 regulatory region 599661 197 bp proximal
Rr599662 regulatory region 599662 556 bp proximal
Rr599663 regulatory region 599663 698 bp proximal
Trappc3 trafficking protein particle complex 3 767 bp upstream
Tssr38986 transcription start site region 38986 1248 bp downstream
Tssr38987 transcription start site region 38987 731 bp upstream
Tssr38988 transcription start site region 38988 744 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory