rs27528562 SNP Detail

Summary

• ID
  rs27528562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126155186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGAGAG TCAGGGATCT
  CTGCCTCTAG GGAGGCCCCG GAATGTCTGT ACTACAGGGA GAAGGCTATA ATAATGATTG
  GTCCTATAAC CTCAGGGAAA GACTGGGAGA AACCCTTGCC CCCCTCCAGC CTTCTCCTAG
  CCTAGCTGGC TCAGTATCTG GACAGAGCAG TTGTCATGGT GAAGGCCGGG TGGTACACAA
  Y
  AGTATATAGT TGCTGCAGAG ACAGACAAGC AGGCTGAAGC GAGGAGACCT GAATTCCAAG
  CACAGTGCCC ACAGGGCTGA CCACTAAGGA GAGACGGCCG GAGCCAAATC CAAAGGGCTG
  TGGTCAGTGA TGACAGGGCT TTGCCTCTGT GAAGGGTAAG AAGGGTTTGG TCAGCTAGCA
  CATTCCTCAA CGATTGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37732481	NES09191973	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		T	C	C	C	T	C	C	C	T
ss45700929	mCV22781794	ABI	CRAMUS_MOUSE	f	SNP	C	T					C		C
ss147407582	ENSMUSSNP5850563	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27528562					SNP	C	T	C	C	C	C	C	T	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732481	NES09191973	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126155186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	697 bp proximal
Rr398487	regulatory region 398487	1501 bp downstream
Rr398488	regulatory region 398488	819 bp upstream
Rr599660	regulatory region 599660	559 bp distal
Rr599661	regulatory region 599661	442 bp proximal
Rr599662	regulatory region 599662	801 bp proximal
Rr599663	regulatory region 599663	943 bp proximal
Trappc3	trafficking protein particle complex 3	1012 bp upstream
Tssr38986	transcription start site region 38986	1003 bp downstream
Tssr38987	transcription start site region 38987	976 bp upstream
Tssr38988	transcription start site region 38988	989 bp upstream