rs27528563 SNP Detail

Summary

• ID
  rs27528563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126155139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCCTTC TAGAGACCCT
  CATGCAGCCT CCTGAGGTCG TGCCACAGGA TGGAGAGTCA GGGATCTCTG CCTCTAGGGA
  GGCCCCGGAA TGTCTGTACT ACAGGGAGAA GGCTATAATA ATGATTGGTC CTATAACCTC
  AGGGAAAGAC TGGGAGAAAC CCTTGCCCCC CTCCAGCCTT CTCCTAGCCT AGCTGGCTCA
  R
  TATCTGGACA GAGCAGTTGT CATGGTGAAG GCCGGGTGGT ACACAACAGT ATATAGTTGC
  TGCAGAGACA GACAAGCAGG CTGAAGCGAG GAGACCTGAA TTCCAAGCAC AGTGCCCACA
  GGGCTGACCA CTAAGGAGAG ACGGCCGGAG CCAAATCCAA AGGGCTGTGG TCAGTGATGA
  CAGGGCTTTG CCTCTGTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37732482	NES09191971	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27528563					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732482	NES09191971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126155139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	744 bp proximal
Rr398487	regulatory region 398487	1454 bp downstream
Rr398488	regulatory region 398488	866 bp upstream
Rr599660	regulatory region 599660	512 bp distal
Rr599661	regulatory region 599661	489 bp proximal
Rr599662	regulatory region 599662	848 bp proximal
Rr599663	regulatory region 599663	990 bp proximal
Trappc3	trafficking protein particle complex 3	1059 bp upstream
Tssr38986	transcription start site region 38986	956 bp downstream
Tssr38987	transcription start site region 38987	1023 bp upstream
Tssr38988	transcription start site region 38988	1036 bp upstream