rs27528564 SNP Detail

Summary

• ID
  rs27528564
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126155074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGGCT CTGGACTAGC
  CTCACTGCTA CTCTCCCAAG GCTACAGACT TCTGTCTTCT TCTTCTGCTC CCTTCTAGAG
  ACCCTCATGC AGCCTCCTGA GGTCGTGCCA CAGGATGGAG AGTCAGGGAT CTCTGCCTCT
  AGGGAGGCCC CGGAATGTCT GTACTACAGG GAGAAGGCTA TAATAATGAT TGGTCCTATA
  M
  CCTCAGGGAA AGACTGGGAG AAACCCTTGC CCCCCTCCAG CCTTCTCCTA GCCTAGCTGG
  CTCAGTATCT GGACAGAGCA GTTGTCATGG TGAAGGCCGG GTGGTACACA ACAGTATATA
  GTTGCTGCAG AGACAGACAA GCAGGCTGAA GCGAGGAGAC CTGAATTCCA AGCACAGTGC
  CCACAGGGCT GACCACTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37732483	NES09191970	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27528564					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732483	NES09191970	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126155074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	809 bp proximal
Rr398487	regulatory region 398487	1389 bp downstream
Rr398488	regulatory region 398488	931 bp upstream
Rr599660	regulatory region 599660	447 bp distal
Rr599661	regulatory region 599661	554 bp proximal
Rr599662	regulatory region 599662	913 bp proximal
Rr599663	regulatory region 599663	1055 bp proximal
Trappc3	trafficking protein particle complex 3	1124 bp upstream
Tssr38986	transcription start site region 38986	891 bp downstream
Tssr38987	transcription start site region 38987	1088 bp upstream
Tssr38988	transcription start site region 38988	1101 bp upstream