rs27528565 SNP Detail

Summary

• ID
  rs27528565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126154619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCTGTC TTGTTTGTGC
  TGGAGATGAG ACCCAGGGCC TTGCCCATAC AAAGCATGCG CTCTACTCCT GATCCCTGAC
  AGCCACCCCA AGGAGTTTTC AGGTTGCAGT CTGAGCAAGG ATGAGACCTT ACAGATCAAT
  ACATGTGCCC CGCCCCCACC CTTAATTCAA AACTGATGAC TCGGAGAACT GTCCCAAAGA
  R
  AAGGCAGGGC CAAGTTCGGG AATCAGAGGC AGAGAGGGGG GATAATGAGT CCGTGAGAAG
  TCAAGGAGAG GCTCCACCTC CAGTCTGTCC AGAACCGCCC TGCCTGACAG CAGGCTGGGT
  GGGGTCAGGC GGCTGCCTGT GACTGTGACT CAGGTTTCTG TGGGCAGCCA AGGCAGCCGG
  CAGGGAGGAG CCCAGACCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37732484	NES09191969	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A		G	A	A	A	G	A	A	G	A
ss45604296	mCV22608149	ABI	CRAMUS_MOUSE	f	SNP		A	G					A
ss45728391	mCV22781795	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss147407576	ENSMUSSNP1213277	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27528565					SNP	A	A	G	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732484	NES09191969	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126154619 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	1264 bp proximal
Rr398487	regulatory region 398487	934 bp downstream
Rr398488	regulatory region 398488	1386 bp upstream
Rr599660	regulatory region 599660	within coordinates
Rr599661	regulatory region 599661	1009 bp proximal
Rr599662	regulatory region 599662	1368 bp proximal
Rr599663	regulatory region 599663	1510 bp proximal
Trappc3	trafficking protein particle complex 3	1579 bp upstream
Tssr38986	transcription start site region 38986	436 bp downstream
Tssr38987	transcription start site region 38987	1543 bp upstream
Tssr38988	transcription start site region 38988	1556 bp upstream