rs27528568 SNP Detail

Summary

• ID
  rs27528568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126154044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG GTCAAGCCTT TGGGTGTCTT
  R
  GAGGAAGTCT TTTTTCAAGC TCCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37732487	NES09192013	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	G	A	G	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27528568					SNP	A	G	A	A	A	A	G	A	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732487	NES09192013	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126154044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	1839 bp proximal
Gm57069	predicted gene, 57069	1738 bp downstream
Rr398487	regulatory region 398487	359 bp downstream
Rr398488	regulatory region 398488	1961 bp upstream
Rr599660	regulatory region 599660	within coordinates
Rr599661	regulatory region 599661	1584 bp proximal
Rr599662	regulatory region 599662	1943 bp proximal
Tssr38986	transcription start site region 38986	133 bp upstream