rs27528570 SNP Detail

Summary

• ID
  rs27528570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126153597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCCAAG AGGATATCCT
  GCCCATTCAG CTCGAGGCAG GGAACTTTGT CGGCCTCAGC TGCCCGGGGC AGTCTCCTCC
  CCCTCCACGG AAATAGACAA GAGCGAGTGA ATCGTTAGTT TCTCCACCAG GCTGGGCTGG
  GGTTGGGGAA ATTCCCTGAC TGAAGATCAG GATGATGTCC CCTTGCAAAT CGTCCTAGAA
  R
  GAAGGCAGGA GCCAAAACGC TCCCAATCGC CTAGTTTTGA TGGGGCAGAG CCCAGGATGA
  ACCCACCCAG TACTGAAGAA AACGGTTAGG AGATTTAACT CAGATACAAA TCTCAGGACT
  AGGGCCTGGG ATGCTGCCTC CACCCCCACA AAGTAGGAAG TGGGAGGAGC CTTTTGGGGG
  GCAGCGGAAA GTGCAGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37732490	NES09192010	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G
ss46446114	mCV24728086	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss147407558	ENSMUSSNP4056816	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27528570					SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732490	NES09192010	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126153597 () rs orientation: forward

Symbol	Name	Function Class
Gm57069	predicted gene, 57069	1291 bp downstream
Rr398487	regulatory region 398487	within coordinates
Rr599659	regulatory region 599659	1840 bp distal
Rr599660	regulatory region 599660	within coordinates
Tssr38986	transcription start site region 38986	580 bp upstream