rs27528571 SNP Detail

Summary

• ID
  rs27528571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126153447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGCAAC TGATGATTAA
  CAGATTTATT TATTTGTTTG CTATTTATTT ATTTAGAAAA GACTGGTGCC TTTATGTTTA
  AGGGTATGAG GGGGCTCCAC ATGCCTTCTC AAAGAAAGTG CAATCATGGG TATGTGTAAC
  ATCTGGGCTG AAACCCCAAG AGGATATCCT GCCCATTCAG CTCGAGGCAG GGAACTTTGT
  Y
  GGCCTCAGCT GCCCGGGGCA GTCTCCTCCC CCTCCACGGA AATAGACAAG AGCGAGTGAA
  TCGTTAGTTT CTCCACCAGG CTGGGCTGGG GTTGGGGAAA TTCCCTGACT GAAGATCAGG
  ATGATGTCCC CTTGCAAATC GTCCTAGAAG GAAGGCAGGA GCCAAAACGC TCCCAATCGC
  CTAGTTTTGA TGGGGCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37732491	NES09192009	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C	C	C	C	C	C	C
ss46432329	mCV24728076	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147407555	ENSMUSSNP1526564	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27528571					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732491	NES09192009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126153447 () rs orientation: forward

Symbol	Name	Function Class
Gm57069	predicted gene, 57069	1141 bp downstream
Rr398487	regulatory region 398487	within coordinates
Rr599659	regulatory region 599659	1690 bp distal
Rr599660	regulatory region 599660	within coordinates
Tssr38986	transcription start site region 38986	730 bp upstream