rs27528912 SNP Detail

Summary

• ID
  rs27528912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127224860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGACAC GCCTACGCTG
  GTTACCACGG ATACCCCGTC TGCGCCCTGC CCATTTGGAT CCCAGCCTGC TGCAAAGTTT
  CAAAGTTTTC GTACGCTCTT GGGGGCCCCC CTCCCGCCCT GTTTGCATCC CTGATGGCAT
  TTTCCAGGGA GGCAGTGTAT CTTTGAGACA GTCTTTCGGG GCTCACACTG TGCTGGCCAC
  Y
  GGAAGGGACA CAACCAGGAA AAGAAATCTC AGGGGCAAGG ATGGTGTTTG GAGAGATTTT
  AGATGACCCA GTCTGCCCAA AGGAGTGTGA AGCAGGGTGG GAGGCCCAGC TTGTGAAGGG
  TGGGAGACCT GCGCTTGAGG GGCTCTGGAG ACTAAGATGT TCAGTCTTAT TCGTGGGCCA
  GGACTGAGAT CCTAAAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37729531	NES09190528	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27528912					SNP	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729531	NES09190528	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127224860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14848	CpG island 14848	70 bp distal
Gjb3	gap junction protein, beta 3	227 bp upstream
Gm40251	predicted gene, 40251	within coordinates
Tssr43418	transcription start site region 43418	1912 bp upstream
Tssr43419	transcription start site region 43419	441 bp upstream
Tssr43420	transcription start site region 43420	281 bp upstream
Tssr43421	transcription start site region 43421	222 bp upstream