rs27528917 SNP Detail

Summary

• ID
  rs27528917
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127223406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAATTCAG AGCTTGAGAG
  TGGAGTTCTC AGAGAGGCTG TGGGAGGGCT GGGCAGAACG GCAGAGGACC AACCGAGCCA
  GGAATTAGAT GGCAGTATTG CTGCCCTCCA CAGGGTCTGT CTTTTGAGAA TCTCAGTTCT
  CGACTAGATG GGGGTATCTG GGAAGCCCTA GAGCGTGAAG ACCCTTATGG GTTTGGTCCT
  K
  GCACTTACTT TTAAACCTTC CAGGGAGGGC CAAAGATTAG CACCTGGATT CTGACCCCCC
  AGGAAATGCC AGGACTGCGT TTACTAGCTG GGAGAAATCC AAGAGAATTC TGTAATGTCG
  CTAACCCTGT TCCTTATCTC TTATCTTGGA TTACTGCAAG AATCTTCGAC TGTTCCCTCC
  CCAGCCGGCT CTTCCTGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37729536	NES09190565	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27528917					SNP	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729536	NES09190565	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127223406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14848	CpG island 14848	583 bp proximal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	within coordinates
Tssr43418	transcription start site region 43418	458 bp upstream
Tssr43419	transcription start site region 43419	934 bp downstream
Tssr43420	transcription start site region 43420	1162 bp downstream
Tssr43421	transcription start site region 43421	1186 bp downstream