rs27528920 SNP Detail

Summary

• ID
  rs27528920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127222926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC CCGCCTGGAA TGCTCTTCCT
  Y
  TCTACCCTAC TCATTAAGGA GGCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37729539	NES09190562	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	C	T	C	C	C	C	T
ss147413916	ENSMUSSNP876799	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27528920					SNP	T	T	T	T	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729539	NES09190562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127222926 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14848	CpG island 14848	1063 bp proximal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	230 bp upstream
Rr599858	regulatory region 599858	1371 bp distal
Rr599859	regulatory region 599859	within coordinates
Rr599860	regulatory region 599860	18 bp proximal
Rr599861	regulatory region 599861	584 bp proximal
Rr599862	regulatory region 599862	1085 bp proximal
Rr599863	regulatory region 599863	1701 bp proximal
Tssr43418	transcription start site region 43418	within coordinates
Tssr43419	transcription start site region 43419	1414 bp downstream
Tssr43420	transcription start site region 43420	1642 bp downstream
Tssr43421	transcription start site region 43421	1666 bp downstream