rs27528922 SNP Detail

Summary

• ID
  rs27528922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127222538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAGTCC CTGGGAATGG
  CATGCAGATA GGGGTGTGAG AGTATGTAGC TCTCCCCGAG CCTGTGTGGA CCTGGATGTA
  CACGTGAGTG CTTCCAAGTC TGTTGGGATG CCTGCTGGAT CACCAACCAC CTCAGCCCAA
  GCTATATCCT TGTCCATCTT CCCGCCTCGG TCCTTCATAG GCCTTTGAGA TATTCTCTGC
  R
  CTCTGTAGCT CATGAAATCA TGGTTACATC CCTCCCTTCT TAAAACTTGT TACTAGGGGC
  TGGAAAGATG GCTTGGTGGT TAAGAGCGCT GACTGCTCTT CCGAAGGTCC TGAGTTCGAA
  TACTAGCAAC CACGTGGTGG CTCACAACCA TCCGTAAGGA GATCTGGAGC CCTCTTCTGG
  AGTGTCTGAA GACAGCTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37729541	NES09190587	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27528922					SNP	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729541	NES09190587	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127222538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14848	CpG island 14848	1451 bp proximal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	618 bp upstream
Tssr43418	transcription start site region 43418	353 bp downstream
Tssr43419	transcription start site region 43419	1802 bp downstream