rs27531168 SNP Detail

Summary

• ID
  rs27531168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117010833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATTCTTT GCAGGTAACT
  TCAAAATCCA CGAAAATCTT AACTGCTGGG AAGACTCAAT GTCAAAGTCC CAGCCTTTCC
  CGGAACCTGG CTGGAGGTGT AGCCAGCTAT GTGCTTAAGA TGCCCAGCAC ACATACACCA
  ATTAAAGAAC CCTCAAAACT CACATCTACA AAGGAAAGGG GCAGCCTTTC TAGCCATAAT
  R
  CAAGCATGAT TTACACACAC CCTAATGTTG AATCTCCGCA TAGAAGAGCC CCTGCCACAC
  CAATCCACTC TAGGTTCCCA AAAGACCAGG GGAAATCTGG CTTTACTGGA CTGGGCCCCT
  CACTACAGCT GCACAGTAGA GATGAGTTTG CTCAGAGAGC AGGAAAAAAA CCAGCCTCTC
  CAAACACCTA GACAGCATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37693301	NES09221762	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27531168					SNP	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693301	NES09221762	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117010833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	1721 bp proximal
Gm22980	predicted gene, 22980	457 bp downstream
Gm26330	predicted gene, 26330	1550 bp downstream
Rps8	ribosomal protein S8	200 bp downstream
Rr377051	regulatory region 377051	within coordinates
Rr598067	regulatory region 598067	1716 bp distal
Rr598068	regulatory region 598068	307 bp distal
Snord38a	small nucleolar RNA, C/D box 38A	880 bp downstream
Tssr38607	transcription start site region 38607	190 bp upstream