GCTGGAGGTG TAGCCAGCTA TGTGCTTAAG ATGCCCAGCA CACATACACC AATTAAAGAA CCCTCAAAAC TCACATCTAC AAAGGAAAGG GGCAGCCTTT Y TAGCCATAAT ACAAGCATGA TTTACACACA CCCTAATGTT GAATCTCCGC ATAGAAGAGC CCCTGCCACA CCAATCCACT CTAGGTTCCC AAAAGACCA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37693302 | NES09221761 | PERLEGEN | MM_PANEL2 | f | SNP | C | T | C | C | C | C | C | C | T | ||
ss45714756 | mCV22659091 | ABI | CRAMUS_MOUSE | f | SNP | C | T | C | T | |||||||
ss147285168 | ENSMUSSNP3383343 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | T | |||||||||
SNP Consensus Information | ||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs27531169 | SNP | C | T | C | C | C | C | T | C | C | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37693302 | NES09221761 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr4:117010822 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi14653 | CpG island 14653 | 1732 bp proximal | ||||||
Gm22980 | predicted gene, 22980 | 468 bp downstream | ||||||
Gm26330 | predicted gene, 26330 | 1561 bp downstream | ||||||
Rps8 | ribosomal protein S8 | 211 bp downstream | ||||||
Rr377051 | regulatory region 377051 | within coordinates | ||||||
Rr598067 | regulatory region 598067 | 1705 bp distal | ||||||
Rr598068 | regulatory region 598068 | 296 bp distal | ||||||
Snord38a | small nucleolar RNA, C/D box 38A | 891 bp downstream | ||||||
Tssr38607 | transcription start site region 38607 | 201 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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