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rs27531169 SNP Detail
Summary
  • ID
    rs27531169
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:117010822 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GCTGGAGGTG TAGCCAGCTA TGTGCTTAAG ATGCCCAGCA
    CACATACACC AATTAAAGAA CCCTCAAAAC TCACATCTAC AAAGGAAAGG GGCAGCCTTT
    Y
    TAGCCATAAT ACAAGCATGA TTTACACACA CCCTAATGTT GAATCTCCGC ATAGAAGAGC
    CCCTGCCACA CCAATCCACT CTAGGTTCCC AAAAGACCA                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
DBA/2J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss37693302 NES09221761 PERLEGEN MM_PANEL2 f SNP C T C C C C C C T
ss45714756 mCV22659091 ABI CRAMUS_MOUSE f SNP C T C T
ss147285168 ENSMUSSNP3383343 ENSEMBL ENSEMBL_Sanger f SNP T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
DBA/2J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs27531169 SNP C T C C C C T C C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37693302 NES09221761 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:117010822 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14653 CpG island 14653 1732 bp proximal
Gm22980 predicted gene, 22980 468 bp downstream
Gm26330 predicted gene, 26330 1561 bp downstream
Rps8 ribosomal protein S8 211 bp downstream
Rr377051 regulatory region 377051 within coordinates
Rr598067 regulatory region 598067 1705 bp distal
Rr598068 regulatory region 598068 296 bp distal
Snord38a small nucleolar RNA, C/D box 38A 891 bp downstream
Tssr38607 transcription start site region 38607 201 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory