rs27533268 SNP Detail

Summary

• ID
  rs27533268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116550900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGTCTCAC TAATGGTAGG TTGGTATAAC TTGTAGCAAG
  CCTATTTCCT TAGGAATTCT AACAATGAAG ACTTATAATG CGTTTTTCTC AATCCTTCAA
  Y
  TTCTTCCACC CAGGGGCCTT TTTATTATTG ATGATAAAGG TATCCTTCGA CAGATAACAA
  TAAACGATCT TCCCGTTGGC CGCTCTGTGG ATGAGATTAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37694303	NES09219668	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27533268					SNP	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694303	NES09219668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116550900 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38559	transcription start site region 38559	1804 bp downstream
Tssr38560	transcription start site region 38560	1766 bp downstream
Tssr38561	transcription start site region 38561	16 bp upstream
Tssr38562	transcription start site region 38562	114 bp upstream
Tssr38563	transcription start site region 38563	244 bp upstream
Tssr38564	transcription start site region 38564	377 bp upstream
Tssr38565	transcription start site region 38565	408 bp upstream