rs27533269 SNP Detail

Summary

• ID
  rs27533269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116550618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCTGGG GCTCAAATTC
  AGGTGCACAT AGTTGAAAGA GCAGCACTTC ACTGAGTCAT CTCTCTTCGG CTCCTTTGTT
  TTTAGTTTTG AGACAGTCTT GTTATAATAT AGCCCTAGAT GGCCTTAAAC TTCAGGTTGA
  CCTCTTACTA GAATTTATGT GCCTGTGCCA TCATGCCTCA CCTCCAACCT ATTTTATTTT
  R
  GAAATGGTGT CAGATAGCTG AGGATAAACT TGAACTCCTG ATCAACTAAC TGTCTGCACT
  TTACATTAGT GCACCATGTC TGCTTTATTT GGTTTTGGGG ATCGACCCAG TCTTTTCTGC
  TAGGCAGGCA CTCTGCAAAC TGAGCTATAG CTCTTTCTCA TTGAGTTATT TAATGTAGTG
  AGTGGTCTCA CTAATGGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37694304	NES09219698	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	A	A	G		G	A	G	G		G
ss321277801	CHEV_4_116366026	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27533269					SNP	A	G	A	A	A	G	A	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694304	NES09219698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116550618 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38559	transcription start site region 38559	1522 bp downstream
Tssr38560	transcription start site region 38560	1484 bp downstream
Tssr38561	transcription start site region 38561	298 bp upstream
Tssr38562	transcription start site region 38562	396 bp upstream
Tssr38563	transcription start site region 38563	526 bp upstream
Tssr38564	transcription start site region 38564	659 bp upstream
Tssr38565	transcription start site region 38565	690 bp upstream