rs27533271 SNP Detail

Summary

• ID
  rs27533271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116550556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAACCTG GTGTTTCTCA
  GACATTGTCC ACTATTTTTT AGAGATAGTG TCTCATTGAC TTGTCTTCTG GGGCTCAAAT
  TCAGGTGCAC ATAGTTGAAA GAGCAGCACT TCACTGAGTC ATCTCTCTTC GGCTCCTTTG
  TTTTTAGTTT TGAGACAGTC TTGTTATAAT ATAGCCCTAG ATGGCCTTAA ACTTCAGGTT
  R
  ACCTCTTACT AGAATTTATG TGCCTGTGCC ATCATGCCTC ACCTCCAACC TATTTTATTT
  TAGAAATGGT GTCAGATAGC TGAGGATAAA CTTGAACTCC TGATCAACTA ACTGTCTGCA
  CTTTACATTA GTGCACCATG TCTGCTTTAT TTGGTTTTGG GGATCGACCC AGTCTTTTCT
  GCTAGGCAGG CACTCTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694306	NES09219696	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27533271					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694306	NES09219696	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116550556 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38559	transcription start site region 38559	1460 bp downstream
Tssr38560	transcription start site region 38560	1422 bp downstream
Tssr38561	transcription start site region 38561	360 bp upstream
Tssr38562	transcription start site region 38562	458 bp upstream
Tssr38563	transcription start site region 38563	588 bp upstream
Tssr38564	transcription start site region 38564	721 bp upstream
Tssr38565	transcription start site region 38565	752 bp upstream