rs27533272 SNP Detail

Summary

• ID
  rs27533272
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116549738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGCCTC ATGAATACCT
  TGTACCACCA GCTTCATGAG TAGGTAGGAT TAAAGGTATA CCACAACTTC TGGCAGTGTG
  TTGTTGATTT CTTGAGCAAA TTTAGAGGTT TGACAGTAGA CTGAAGTACT GGTTTCTGGA
  CTCCCACTGC CTCTTAGCAG AAGCGAAGTA CTTTGAGTTT CTAATATCTA ATATGCACTG
  S
  TGAGCACACT TAAAGCACAT TGACTTTTTT GTTTGTTTGC TTGTTTTTTT TTTGTTTTTT
  TGGTTTTTCG AGACAGGGTT TCTCTGTATA GCCCTGGCTG TCCTGGAGCT CACTTTGTAG
  ACCAGGCTGG CCTCGAACTC AGAAATCTGC CTGCCTCTGC CTCCCGAGTG CTGGGATTAA
  AGGCGTGCGC CACCACGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37694307	NES09219737	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	G		G	G	C	G		G
ss321277798	CHEV_4_116365146	CHEVERUD	SCREENING_POP	f	SNP							G					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27533272					SNP	G	C	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694307	NES09219737	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116549738 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38557	transcription start site region 38557	1844 bp downstream
Tssr38558	transcription start site region 38558	1482 bp downstream
Tssr38559	transcription start site region 38559	642 bp downstream
Tssr38560	transcription start site region 38560	604 bp downstream
Tssr38561	transcription start site region 38561	1178 bp upstream
Tssr38562	transcription start site region 38562	1276 bp upstream
Tssr38563	transcription start site region 38563	1406 bp upstream
Tssr38564	transcription start site region 38564	1539 bp upstream
Tssr38565	transcription start site region 38565	1570 bp upstream