rs27533273 SNP Detail

Summary

• ID
  rs27533273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116549570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCAGAA GAGGGCTTCA
  GATCTCATTA TGGGTGGTTG TGAGCCATGT GGTTGCTGGG ATTTGAACTC AGAACCTTTG
  GAAGAGAAGT CAATGCTCTT AACCACTGAG CTATCTCACC CGCCCATTTT TTTGTTTTTA
  GTCAGGGTAA TTTTTAACTC AAGCTGGCTT TTAGCCTCAT GAATACCTTG TACCACCAGC
  Y
  TCATGAGTAG GTAGGATTAA AGGTATACCA CAACTTCTGG CAGTGTGTTG TTGATTTCTT
  GAGCAAATTT AGAGGTTTGA CAGTAGACTG AAGTACTGGT TTCTGGACTC CCACTGCCTC
  TTAGCAGAAG CGAAGTACTT TGAGTTTCTA ATATCTAATA TGCACTGGTG AGCACACTTA
  AAGCACATTG ACTTTTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37694308	NES09219736	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	C		T	T	C	C		T
ss321277797	CHEV_4_116364978	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27533273					SNP	T	C	T	T	T	T	T	T	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694308	NES09219736	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116549570 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38557	transcription start site region 38557	1676 bp downstream
Tssr38558	transcription start site region 38558	1314 bp downstream
Tssr38559	transcription start site region 38559	474 bp downstream
Tssr38560	transcription start site region 38560	436 bp downstream
Tssr38561	transcription start site region 38561	1346 bp upstream
Tssr38562	transcription start site region 38562	1444 bp upstream
Tssr38563	transcription start site region 38563	1574 bp upstream
Tssr38564	transcription start site region 38564	1707 bp upstream
Tssr38565	transcription start site region 38565	1738 bp upstream