rs27533332 SNP Detail

Summary

• ID
  rs27533332
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116510511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCGGGAGA TCAGAAGATA
  AGCAGAAAGG TAAAGTTTCA GATGGGGAGG TCTTTCACAA ACCATGTCTG TTAAGAAGCA
  CAGCATCTTA TATATTATTT CCAGGGGAGA AATTGAACAC AGCAGCAAGT GTCATACAAT
  GGAACTAAAT CAGGGGAACG CTAATAAAAC AATGTTGATT AAGGGGAACA CAGGGTATCT
  M
  AAAAACATTA CACGCTAAGC TCTCCGCAGC CTTTGGACTG ATAACTAAAG TCCCATTTGG
  TGGGAAGATT TGGGTTCTCA GGATCTGAAG CAGTAGCTCC CCCAAGGCCC TGGCTTCCGG
  CCATCACTGG CCTTGCCAAG CATATTCCTG GTTATGAGAA GGAACTGTGC TACATACAGC
  GGGGGCAAAA GAATAGAAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37694368	NES09220696	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C		C	C	A		C
ss321277681	CHEV_4_116325919	CHEVERUD	SCREENING_POP	f	SNP									C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27533332					SNP	C	C	A	C	C	C	C	C	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694368	NES09220696	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116510511 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	1640 bp upstream
Cpgi14637	CpG island 14637	1607 bp distal
Rr597944	regulatory region 597944	1645 bp distal
Rr597945	regulatory region 597945	1627 bp distal
Rr597946	regulatory region 597946	1144 bp distal
Rr597947	regulatory region 597947	1716 bp proximal
Tssr38539	transcription start site region 38539	1779 bp downstream
Tssr42909	transcription start site region 42909	1905 bp upstream
Tssr42910	transcription start site region 42910	1888 bp upstream
Tssr42911	transcription start site region 42911	1868 bp upstream
Tssr42912	transcription start site region 42912	1765 bp upstream
Tssr42913	transcription start site region 42913	1743 bp upstream
Tssr42914	transcription start site region 42914	1678 bp upstream
Tssr42915	transcription start site region 42915	1649 bp upstream
Tssr42916	transcription start site region 42916	1632 bp upstream