rs27533342 SNP Detail

Summary

• ID
  rs27533342
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116485267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTTCTG ACGGGGATAC
  CCGAGAAGGT GACAGGTATT CCCTATGTCC TCTCAGTCTT AACGGATGGA AACGCAAGAG
  CTGAGCACGA GTACAGCAGC AACGGCTAGA ACTGACCAGA CAGACGCGTG GCTCTGGGCC
  TCAGCAACTA CTGACGAAAC AAGATGCTGC TCTAGGATTG GCTACAGATA AAACTATCGC
  K
  CTTGATTCAA AACTCTTAGA GGGGCAAAGG GATGCGGGTG TTTAGATCCA CCGCCTTTGA
  CTGATCCAAT CCGTTGCTGC CATCATCTTA CTTTACCCAC GTCCAAGTTG TTAAGTTAAA
  TCCTGTACTT AAAACACTTT AAATATTTTA GCTGTCTCTC TTTTTTTTTC TTTCATATAT
  ATTAGGTAGG GACTTACAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694378	NES09221359	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27533342					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694378	NES09221359	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116485267 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	within coordinates
Cpgi14636	CpG island 14636	556 bp distal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	129 bp upstream
Rr84401	regulatory region 84401	734 bp proximal
Rr84402	regulatory region 84402	1734 bp proximal
Rr99808	regulatory region 99808	within coordinates
Rr398403	regulatory region 398403	1070 bp downstream
Rr398404	regulatory region 398404	375 bp downstream
Rr398405	regulatory region 398405	within coordinates
Tssr42894	transcription start site region 42894	673 bp upstream
Tssr42895	transcription start site region 42895	567 bp upstream
Tssr42896	transcription start site region 42896	162 bp upstream
Tssr42897	transcription start site region 42897	114 bp upstream
Tssr42898	transcription start site region 42898	82 bp upstream