rs27533343 SNP Detail

Summary

• ID
  rs27533343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116484402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGATGGCGG CCGTGAAAAG CCGGGCAGGG GGCGCCAGCC
  ACCCGCCGTT ACCGCTGGCG CGCCAGCTCT TCGCAAGTAG GGCTTCTCCA CAGAGCAACC
  Y
  TCTCCGCACG GCCGCCGTTG TTCCGGGGAA GGCAGCTGTC CCACCCACCA GCCCGTCCCG
  CCCGGGAAGC CAAGTCCCCG GACTCTCCCT GAGGACTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694379	NES09221356	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	T	C	C	C	C	C	C	C
ss45622980	mCV23197282	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		T
ss147279906	ENSMUSSNP2432036	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27533343					SNP	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694379	NES09221356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116484402 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	within coordinates
Cpgi14636	CpG island 14636	within coordinates
Nasp	nuclear autoantigenic sperm protein (histone-binding)	within coordinates
Rr84401	regulatory region 84401	1599 bp proximal
Rr99808	regulatory region 99808	within coordinates
Rr398403	regulatory region 398403	205 bp downstream
Rr398404	regulatory region 398404	189 bp upstream
Rr398405	regulatory region 398405	658 bp upstream
Tssr42894	transcription start site region 42894	162 bp downstream
Tssr42895	transcription start site region 42895	281 bp downstream
Tssr42896	transcription start site region 42896	691 bp downstream
Tssr42897	transcription start site region 42897	716 bp downstream
Tssr42898	transcription start site region 42898	767 bp downstream