rs27533345 SNP Detail

Summary

• ID
  rs27533345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116484076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTAAACC TGGTAGTGAG
  TATATAATAA AATTCATTGC GCCCCACCGA CCCGGCAAAA GCAGCATCCA CTCCAAACAA
  TGGAGTTTTC CCGCCTCCTA CAGGCCCCGC CCACTCCTAA GAGCCAAAAC TACGACGATC
  AGCGTGCAAA GCCCCGCCCT CTGAGAGGCC CCACCCACCC GCGTCCCCTG TTCCAAGCCT
  Y
  CATCCTCGTG TGGGTTTTTT TTTTTTTTTT TTTTTTTTGG CGCCAAATCT GTTGGCCAAT
  TTCTCGGTAC GTCTACAGAC TCTCTACAGA GACGCACCCT AGGAGTGCGC GATCAGGAGG
  GGCTCAAGGA CCGACTGGAG CCGGGCCCCG CCTACCTACC GGCAACCTCG GGCAAGGGGT
  GGAAAAAAGG GGCCGGCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37694381	NES09221353	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C		C	T		C
ss321277619	CHEV_4_116299484	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27533345					SNP	C	C	T	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694381	NES09221353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116484076 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	within coordinates
Cpgi14636	CpG island 14636	within coordinates
Nasp	nuclear autoantigenic sperm protein (histone-binding)	within coordinates
Rr84401	regulatory region 84401	1925 bp proximal
Rr99808	regulatory region 99808	within coordinates
Rr398403	regulatory region 398403	within coordinates
Rr398404	regulatory region 398404	515 bp upstream
Rr398405	regulatory region 398405	984 bp upstream
Tssr42894	transcription start site region 42894	488 bp downstream
Tssr42895	transcription start site region 42895	607 bp downstream
Tssr42896	transcription start site region 42896	1017 bp downstream
Tssr42897	transcription start site region 42897	1042 bp downstream
Tssr42898	transcription start site region 42898	1093 bp downstream