rs27533346 SNP Detail

Summary

• ID
  rs27533346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116483725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAAAAAA GGCAAGGTAA
  ACTGGAAAAT CGAACCTGTA TGGAAAATAA CTTCTTTCCT CGAACTGATG AATGCTTCTG
  TGCATATGGG AGAGATCAAG TTAGATTAGC ACTTTAAAGC TCTCAAATCA AGCATTCCTC
  CTTTGGGGTC CTTTCGCTTA GCAAACTCAT CTAGCAAGTA AACACTAGAC TGATAGCTAC
  R
  TACAGCCTTT ACCGAAGACA CTACGCAAGT AAAGTGTCCC TTGAAGCAAC AAAATCCCCG
  TCCCACATAC CGAAAACCTA ACGAATCAAG ACACTTCTCC GCAAAGGTTA AGAGTTACAA
  AGCTTCAGTC CCGTAGCCAC CCTCAAGATT ACTGTAAACC TGGTAGTGAG TATATAATAA
  AATTCATTGC GCCCCACCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37694382	NES09221351	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	A		A	A	G	A		A
ss321277616	CHEV_4_116299133	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27533346					SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694382	NES09221351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116483725 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	315 bp upstream
Cpgi14636	CpG island 14636	184 bp proximal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	within coordinates
Rr99808	regulatory region 99808	within coordinates
Rr398403	regulatory region 398403	171 bp upstream
Rr398404	regulatory region 398404	866 bp upstream
Rr398405	regulatory region 398405	1335 bp upstream
Tssr42894	transcription start site region 42894	839 bp downstream
Tssr42895	transcription start site region 42895	958 bp downstream
Tssr42896	transcription start site region 42896	1368 bp downstream
Tssr42897	transcription start site region 42897	1393 bp downstream
Tssr42898	transcription start site region 42898	1444 bp downstream